David F

update masks_flows_to_seg to not require diameter input

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I have trained a model using cellpose 2.0 GUI but I am running into errors getting it to run in notebook. import skimage.io import time, os, sys #import matplotlib.pyplot as...

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4

When I attempt to open a swc file from neuromorpho.org with the NEURON standard. this is what the file looks like.  import neurom as nm m = nm.load_morphology("C:\\Users\\David\\Documents\\NeuroComp\\project\\Soma_in_tectum_653519\\3_mod_T_160621_F2M2_loom_02.swc") Traceback...

When I register images in a stack there are some stacks that consistently over scale the images. Is there a way to limit the level of the transformations applied to...