Danny Conrad

Thank you @badoi for posting the reverse-complement tip. I was having a similar map rate issue and using the revcomp whitelist fixed it for me 👍 Just as a suggestion...

I should also add that I am blown away with how fast Chromap is, by the way. I couldn't believe my eyes when you reported 16X speed enhancement over cellranger-atac,...

Excellent! That's a much more elegant solution, since it should also be useful in cases where users mistakenly use the wrong barcode whitelist. Thanks so much for addressing that so...

@aimer-entropy @julia-kraus Check your version of RcppArmadillo using `RcppArmadillo::armadillo_version(single = F)` If your version is 10.1.0, this is the reason. Try installing an older version of RcppArmadillo, as suggested in...

I didn't realize the Discussion section was separate and just noticed that someone brought up a similar concern at #1935, but it hasn't been answered yet. Since I consider this...

For additional context, here's an example of the scaled vs non-scaled corToDepth vectors, which would be the same if the reduced embedding was getting scaled by component instead of by...

To add to this, it seems (in my hands) that the only serious change that `scaleDims` brings about is whether or not that first dimension is excluded by the `corCutOff`...