danielsf

@alih100011 Can you include more of the script that caused the error? Specifically: which data release are you trying to access?

@DowntonCrabby Can you try pulling `rc/2.16.1` and working off of that branch? This should be fixed.

I apologize if I appear to be piling on, but running python 3.9, zarr-py version 2.13.3, I cannot even get this to run without emitting the warning about leaked semaphore...

@matchings I think this branch https://github.com/AllenInstitute/AllenSDK/tree/ticket/2187/dev will fix the problem for you. Note the added `passed_only` kwarg in `get_ophys_experiment_table` that must be set to `False` to get *everything*. If you...

The 35 `ophys_experiment_id`s that were not returned by a naive `passed_only=True` query from LIMS were ``` could not find 1012165655 could not find 1008408505 could not find 1011771129 could not...

@matchings can you try loading the NWB file "by hand" and see if it is also slower? Isilon is undergoing some heavy maintenance this quarter. All I/O from `/allen` is...

@matchings Yes. However you would do it without the SDK. I just want to get a sense of whether our software or our hardware is the problem. If the latter,...

As of 5/9/2022: Example input.jsons for the metadata writing module can be found ``` /allen/programs/mindscope/workgroups/np-behavior/vbn_data_release/metadata_input_jsons ``` (note that you will still need to specify an `output_dir`). The metadata writing module...

For the record: the problem isn't arising strictly because you are instantiating a VBN behavior session with a class that was written for a VBO behavior session (though: that may...

Is the lesson of this rigamarole that there isn't one `BehaviorSession` class to rule them all and we need to have `BehaviorSession` classes associated with each data release, i.e. `VBO2021BehaviorSession`...