Puqing Deng

Dimension mismatch for einsum() in ops.py

3

When using DAP, I encountered the following error: ``` File "/home/pdengad/protein/fastfold/fastfold/model/fastnn/ops.py", line 153, in forward norm = torch.einsum('bsid,bsjd->bijd', M_mask_col, M_mask) + 1e-3 File "/home/pdengad/anaconda3/envs/fastfold/lib/python3.8/site-packages/torch/functional.py", line 360, in einsum return _VF.einsum(equation,...

All-by-all alignment issue

1

I did an all-by-all alignment against my own database with the default setting. From my understanding, if there exists an alignment between query A and target B, an alignment between...