Daniel Lowe

Java 8 is a requirement for many other libraries nowadays. There definitely is precedent for upping the Java version in a minor update e.g. commons-io, commons-compress, and common-lang all did...

> > Java 8 is a requirement for many other libraries nowadays. There definitely is precedent for upping the Java version in a minor update e.g. commons-io, commons-compress, and common-lang...

@MysterionRise Unfortunately not really as a few months after this we switched to using Bingo NoSQL. I think as I haven't provided sufficient information to reproduce the issue from scratch...

Do you mean like https://lifescience.opensource.epam.com/bingo/bingo-oracle.html ? (there are also corresponding pages for the PostgreSQL, SQL Server and NoSQL implementations, but the detailed options are explained in the Oracle implementation's help...

FYI OPSIN is currently using v1.2.3.r0 of Indigo. Sourire seems to currently be using v1.1.12. The API of Indigo is essentially constant between versions, with the exception that between those...

Indigo does have an experimental option which improves rendering of molecules like this: http://lifescience.opensource.epam.com/indigo/examples/layout.html When I tested it, while it improved this sort of case, it caused regressions on other...

If you're happy with being confined to only the >100 million compounds in PubChem then a simple way of doing this may be using their REST API: e.g. https://pubchem.ncbi.nlm.nih.gov/rest/pug/compound/cid/14969/property/isomericsmiles/txt CIDs...

**Original comment by Daniel Lowe (Bitbucket: [dan2097](https://bitbucket.org/dan2097), GitHub: [dan2097](https://github.com/dan2097)).** ---------------------------------------- I think the issue is that the (2R,5R) already fully specified the stereochemistry making the trans redundant and hence when...

**Original comment by Alex Clark (Bitbucket: [aclarkxyz](https://bitbucket.org/aclarkxyz), GitHub: [aclarkxyz](https://github.com/aclarkxyz)).** ---------------------------------------- Indeed. Now as to whether or not that's a fatal bug... your call!

**Original comment by Daniel Lowe (Bitbucket: [dan2097](https://bitbucket.org/dan2097), GitHub: [dan2097](https://github.com/dan2097)).** ---------------------------------------- Thanks, there are two area of this name that OPSIN currently doesn’t handle correctly, the N-\(S\)-1-\(isopropoxycarbonyl\)ethyl is not being interpreted...