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pybedtools does not install with python 3.13

Open diekhans opened this issue 11 months ago • 2 comments

This appears to be related to changes in the Python C API

pybedtools.log

diekhans avatar Jan 26 '25 22:01 diekhans

Same in Python 3.13.1

balwierz avatar Jan 27 '25 12:01 balwierz

Looks like Cython 0.29.x doesn't support 3.13. Pybedtools needs to be ported.

theAeon avatar Mar 07 '25 22:03 theAeon

Should be fixed with 0.12.0

theAeon avatar Mar 16 '25 17:03 theAeon

v0.12 now supports Python 3.13 via #424 (thanks @theAeon), and is available on PyPI and bioconda.

daler avatar Mar 17 '25 12:03 daler