metaseq
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daler
Framework for integrated analysis and plotting of ChIP/RIP/RNA/*-seq data
How is missing signal data in bigwig file treated? Are these intervals treated as zeros or ignored? Is there an argument for how this is treated in the `array()` method?
Hello again. I am making an average plot of Bigwig (signal) files and a gff3 reference file (midpoint of binding sites). I have succesfully used this script before, but when...
(Conda gives a conflicting requirements error, so I installed metaseq with pip.) When trying to import metaseq, I get the following error: ``` In [2]: import metaseq --------------------------------------------------------------------------- ImportError Traceback...
Hi, I am trying to follow example 1 for metaseq (https://daler.github.io/metaseq/example_session.html) and am having problems with the example data. I'm following the script by copying from the example page (or...
Decide if it would be useful to support cWig format http://bioinformatics.oxfordjournals.org/content/30/18/2543.full.html?etoc They report substantial query time improvements; could be useful for parallel array construction. They provide Python API via SWIG.
