metaseq
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daler
Framework for integrated analysis and plotting of ChIP/RIP/RNA/*-seq data
Hi, I tried to import metaseq and got the error No module named 'helpers'. I then pip install helpers and import metaseq again. Then I got the error "ImportError: cannot...
metaseq cannot be installed with python2 anymore because of biopython which is not compatible with python2 anymore. Moreover, the metaseq dependencies (e.g. import plotutils to import methods from the "plotutils.py"...
Hi again! I was hoping you might be able to trace the root issue of my problem. I am trying to plot a heatmap using a gff file for signal...
In the original 2014 publication, it says that we can obtain aggregated read density over features of interested using bedGraphs. For strand-specific data (e.g. nascent) it would be nice to...
Hello, I have installed metaseq with conda (`conda install --channel bioconda metaseq-all`) and I have downloaded the Example1. Howver, when I run the cell where metaseq should be imported: ```...
More of a question than an issue. How would you place two sub-plots side by side for example one of the tutorial for this plot: ``` fig = metaseq.plotutils.imshow( #...
I tried installing metaseq with anaconda (I have python 2). I then tried importing it with python 2 and got a segmentation fault. I have re-done this using gcc versions...
I want to extract the TNNI3 gene for example, and plot the ChIPseq signal extending from specified upstream region to downstream region. And pile up several other plots including gene...
how can I use the bam file to draw the figure which contain the tss ,gene body and tts? thank you!
Why do I get an AttributeError when I try to create an array in example 1? >>> import multiprocessing >>> processes = multiprocessing.cpu_count() >>> >>> if not os.path.exists('example.npz'): ... ip_array...
