Ryan Dale

feat: Unify containers

9

This addresses https://github.com/bioconda/bioconda-containers/issues/74#issuecomment-1934528159 by unifying all container builds within this repo, driven by a single bash script. - the dependencies among containers to be more formally declared - containers are...

location of maintained code

4

@bgruening do you think it would be useful to add this to bioconda-utils? I was about to update the bioconda docs to point to this repo, but then realized it...

added #includes for compilation on g++ 4.4.3

2

I had trouble compiling filo in Ubuntu 10.04, which has gcc/g++ version 4.4.3 in the repos. Upon compiling, I got errors like ``` shuffle.cpp:32: error: ‘strlen’ was not declared in...

Update [`toulligqc`](https://bioconda.github.io/recipes/toulligqc/README.html): **2.5.6** → **2.7.1** [](http://bioconda.github.io/recipes/toulligqc/README.html) [](https://anaconda.org/bioconda/toulligqc/files) Info | Link or Description -----|-------------------- Recipe | [`recipes/toulligqc`](https://github.com//bioconda/bioconda-recipes/tree/bump/toulligqc/recipes/toulligqc) (click to view/edit other files) Summary | A post sequencing QC tool...

feat: containers overhaul

1

Previously, the various bioconda images were built in different places (`bioconda-containers` and `bioconda-utils`) using different methodologies and repeated-but-not-*quite*-the-same code. This PR aims to consolidate all image building into a single...

Branch off of #1049 to test behavior of quay.io container/manifest uploads, but using this branch rather than master. Will close this when test is complete.