gffutils

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test_roundtrip fails: test_roundtrip

1

``` ______________________________________________________________________________________ test_roundtrip _______________________________________________________________________________________ def test_roundtrip(): """ Feature -> SeqFeature -> Feature should be invariant. """ db_fname = gffutils.example_filename("gff_example1.gff3") db = gffutils.create_db(db_fname, ":memory:") feature = db["ENSMUSG00000033845"] feature.keep_order = True dialect...

yurivict

Trouble with db.region(..., completely_within=True)

1

I'm using your amazing library to work with some DNA modifications, which generally are 1 or 2 nucleotide "spots". while using the "completely_within=True" param I'm not getting anything back as...

Lservi

Value of Target attribute gains quotes when it shouldn't in round trip manipulation

4

Hi there, I've loaded a GFF file into memory like this: ``` db = gffutils.create_db(args.gff,":memory:", force=True,merge_strategy="create_unique") ``` If I do this: ``` for feature in db.all_features(): feature.seqid = pepid_to_scafid[feature.seqid] feature.start...

photocyte

simplejson was of backport of Python3 json module for Python2

a-detiste