Daisie Huang

I think that the assumption that students will have already absorbed and processed the bash lesson is a bit of a high expectation, and will make people who feel like...

What about a ["stone soup"](https://www.google.com/url?sa=t&rct=j&q=&esrc=s&source=web&cd=4&ved=0ahUKEwj0kYPApZ3ZAhUIHGMKHUpnB8sQFghgMAM&url=https%3A%2F%2Fen.wikipedia.org%2Fwiki%2FStone_Soup&usg=AOvVaw1ySeWJ8P_6sD9hKPyu5VYg) recipe instead of guacamole? I feel like the story lends itself to people contributing a bunch of arbitrary things and is pretty inclusive.

Ugh, I have never considered the time available for each exercise! If people have an idea of how long all the exercises take, then sure, that seems like a good...

I'm imagining two forms of 400 error that this could be applied to: * InvalidHeaderFormat: header does not include information about contigs or references * InvalidReferenceName: requested reference name is...

Same here. Python 3.7.12, macOS.

I'm still a bit confused...if each variant represents a single variation, that is, one allele, how can that same variant contain zygosity in caseLevelData? The definition for CaseLevelVariant contains an...

Okay. So this is assuming that we wouldn't want to record a T/T homozygote at all, because they're both reference?

How would that reference homozygous caseLevelVariant be represented in the schema?

The general question is that to me, it seems like Beacon/VRS should want to capture what is possible in a VCF file. Since VCF specifically mentions "ALT — alternate base(s):...

Thanks, Manu. That file is one of the ones I had been looking at, so it's good to hear from you. I think you were using the LegacyVariation schema, though,...