Chengxin Dai

Hi @vdemichev. I supplemented the library. But a new error appeared. How can I fix this? These libraries are produced by the second step. https://github.com/bigbio/quantms/issues/164 ``` 4 files will be...

Thanks a lot. So MS2.Scan corresponds to the scan number in the mzML file, right? eg. `MS2.scan`=73091 in main report ->`` in mzML file.

Got it. Thanks a lot. Best, Chengxin

Hi vdemichev, I tried to use `RT` column to match peptides and spectra, but I didn't find the corresponding `RT` value in mzML. What do you think?

| Source Name | Peptide | Peptide | data file | | :----: | :----: | :----: | :----: | | Sample1 | CT=peptide;Mass=976.448;PS=AGFAGDDAPR | CT=peptide;Mass=1265.612;PS=DGNGYISAAELR | 20140919_QE6+_LC5_CY_SA_IsoAsp_40min_12mix_01 |

Sorry. First of all, the experiment uses a mixture of 12 synthetic peptides, so organism, organism part, cell type, etc. will no longer be applicable. I am not sure if...

completed

| Source Name | Characteristics[organism] | Characteristics[organism part] | Characteristics[developmental stage] | Characteristics[disease] | Characteristics[age] | Characteristics[sex] | Characteristics[ancestry category] | Characteristics[cell type] | Characteristics[cell line] | Characteristics[compound] | Characteristics[compound]...

Hi ovigy, the px-submission-tool use jsdrf to verify sdrf files. I tested SDRF_ND9.tsv file with sdrf-pipelines, Everything seems to be fine. But there is a problem with jsdrf verification ....

I may need to look at the jsdrf code, now I can’t see what fields are missing in this file @ypriverol