Dylan A. Dahan

Interpreting output from strain_tracking.py track_markers

1

I am running the strain tracking pipeline and am curious if someone is familiar with results interpretation. I could not find the relevant info on this repo or the [original...

I'm curious about step 1 of the strain tracking process and in particular, "Identify[ing] SNPs (particular nucleotide at a genomic site) that rarely occur in different unrelated samples". Does this...

Interpretation of differentials

7

How do you decide which taxa are reported in the differential ranking? Are the differentials that are reported the coefficients that are the most changing, or those that are significant,...

Update GTDB hyperlink in tutorial pages

4

Just pointing you to new GTDB taxonomy version to update hyperlink in tutorial: https://zenodo.org/record/3951383#.X6AhblNKiHE