Dave Bunten

Create PYPI Package with Modified Name to Avoid Typosquatting and Enable Wide Distribution

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# 💡 Summary # "chirp" is already registered as a package name on PYPI, meaning someone may erroneously believe they're installing CISA's CHIRP but end up with https://pypi.org/project/chirp/ instead. In...

push/pull: Possible bug with individual file push and pull to Google Drive remote storage

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# Bug Report Thank you for the fantastic work with DVC! I noticed an odd behavior while working with individual files and trying to push + pull these in a...

Enable myst-parser mermaid rendering without curly braces in markdown

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Thank you for the great work within this project! In working with mermaid diagrams through this extension and [myst-parser](https://github.com/executablebooks/MyST-Parser) within markdown files I've noticed a minor detail which might assist...

Enable the use of SQLite data sources from remote locations

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### What happens? Hello - thank you so much for the work on `sqlite_scanner`, it's amazing to use this through DuckDB! Would it be possible to use DuckDB to query...

Data Type Mismatch Exceptions are raised as generic Exception and not TypeMismatchException

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### What happens? When querying data values which mismatch the column type in DuckDB using Python a generic duckdb.Exception is encountered instead of duckdb.TypeMismatchException. I'm opening this issue as it...

[Question] What is the best way to nest external .cff file references?

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Hello, thank you for the awesome work on this repo and the Citation File Format! I apologize in advance if this question has already been addressed elsewhere (I searched but...

## Summary Thanks for the great effort on this project, it's been helpful! This is a feature request to add a pre-commit hook configuration for `linkchecker`. Pre-commit provides the [capability...

Hello, thanks for the awesome work in this project! I noticed that when attempting to use [Mermaid mindmap diagrams](https://mermaid.js.org/syntax/mindmap.html) that Jekyll Spaceship is unable to render the diagrams (originally discovered...

Add retry capabilities for `kg2_util.download_file_if_not_exist_locally` to avoid systemic failures

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In attempting to recreate and run the RTX-KG2 pipeline I found that `kg2_util.download_file_if_not_exist_locally` sometimes had a tendency to fail on first attempt to download a resource. When this happens it...

Add data description and provenance for "SMPDB PubMed annotations" (`SMPDB_pubmed_IDs.csv`)

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This issue highlights a need to provide description and provenance for a file used to run the full RTX-KG2 pipeline, `SMPDB_pubmed_IDs.csv`. This file appears to be required for a full...