Daniel Cameron
Daniel Cameron
> Do you have a suggestion how we can get the primary alignment information (equivalent info as in the SA tag) for both secondary and supplementary alignments? The general solution...
Supporting 64 bit reference sequence lengths would useful even if it takes a while for the rest of the ecosystem to catch up.
>Are there any reference sequences that get close to or beyond 4 Gbases? People tend to run into the 512Mb BAM index limit and chop up their reference so they...
Can we just remove the TLEN field? From what I can see, nobody trusts the value written by any other tool so, practically speaking, it doesn't serve any purpose.
> This can be a major headache for data management. Can we define an alternate representation of this with unique allele codes? What is the data management issue that this...
1.6.1.2 "Telomeres are indicated by using positions 0 or N+1, where N is the length of the corresponding chromosome or contig." > putting the first base G is kind of...