Danielle Callan

wondering if there is a known work-around in the mean time? or an update on this? @florian-guily ?

another ex if it helps: ``` k__Bacteria|p__Firmicutes|c__Clostridia|o__Eubacteriales|f__Eubacteriales_unclassified|g__Eubacteriales_unclassified|s__Clostridiales_bacterium|t__SGB15143 2|1239|186801|186802|||1898207| 0.02366 k__Bacteria|p__Firmicutes|c__Clostridia|o__Eubacteriales|f__Eubacteriales_unclassified|g__Eubacteriales_unclassified|s__Clostridiales_bacterium|t__SGB15159 2|1239|186801|186802|||1898207| 0.02308 ```

@Midnighter I think that's as reasonable as anything.. if I want strains from biobakery tools I'd look to strainphlan rather than metaphlan. It's possible a warning would be good, or...

@Midnighter im also wondering if you have a sense for what this would take in terms of effort? i am very interested in getting this working, and would be willing...

this one i think is fun ``` k__Bacteria|p__Firmicutes|c__Negativicutes 2|1239|909932 5.20485 k__Bacteria|p__Actinobacteria|c__Actinomycetia 2|201174|1760 2.05981 k__Bacteria|p__Firmicutes|c__CFGB2834 2|1239| 0.94398 k__Bacteria|p__Proteobacteria|c__Betaproteobacteria 2|1224|28216 0.81827 k__Bacteria|p__Actinobacteria|c__Coriobacteriia 2|201174|84998 0.46979 k__Bacteria|p__Firmicutes|c__CFGB1227 2|1239| 0.404 k__Bacteria|p__Firmicutes|c__CFGB3038 2|1239| 0.18149 k__Bacteria|p__Firmicutes|c__CFGB3054 2|1239|...

I'll put this here in case it proves a helpful reference http://segatalab.cibio.unitn.it/data/Pasolli_et_al.html Also, I'll comment that mapping metaphlan outputs to ncbi taxonomy seems a reasonable use case nonetheless and makes...

having thought about it a bit since yesterday, maybe we need this to actually be two issues? one for supporting metaphlan on the ncbi taxonomy using the solution previously suggested...