Christian Wünsch

Downsampling of reads

9

We are using Biodalliance genome browser with high-coverage bam-files (up to 10,000 reads per base pair). By default, the limit of reads to be displayed is set to 100. (And...

Gene track shows genes at wrong locations

3

Working with Pileup.js, we observed, that the gene track shows the gene annotations at completely wrong genomic locations. Here the steps to reproduce the issue: Your example page at http://www.hammerlab.org/pileup/...

Issues with visualisation of a large set of reads for one position

4

We are using pileup.js for targeted sequencing with high coverage rates (> 1000 reads per position). When the alignment track is to be displayed at a position with many reads,...

EnvDeploy: Toolchains for DSM 6.2.2 not installable

4

`EnvDeploy -v 6.1 -p rtd1296` downloads and installs the toolchain for DSM 6.1. `EnvDeploy -v 6.2.2 --list` lists a lot of available platforms for which the toolkit should be downloadable,...