Robert Cudmore

icon indicating a website link https://cudmorelab.github.io/ icon indicating an email [email protected]

icon company University of California at Davis icon location Davis, California icon location Neuroscientist merging biology and technology

Results 4 issues of Robert Cudmore

Error opening Tif file with bioformats?

I am trying to use python bioformats and can not get started with reading a Tiff file. My ultimate goal is to read Olympus oir files. My system is macOS...

How to read the epoch that a user list is applied to?

Hi All (and Scott!)! First off, thanks so much for developing pyabf, it is **incredibly** useful, well written, and well documented. It has become instrumental in the development of our...

Running aicssegmentation code with a dask array and compute?

2 comment

I am trying to run a few aics-segmentation functions on a [dask](https://dask.org/) array so I can process a number of stacks in parallel. For example `aicssegmentation.core.vessel.filament_3d_wrapper` ... 1) If I...

enhancement

Unable to open czi line-scan kymographs - missing raw frame(t) pixel data

1 comment

First, thanks for working on this critical package. I understand and appreciate how complex opening proprietary binary file formats can be. I followed the package from aicsimageio to its new...

bug