Cristiano Torti comments

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                                            Cristiano Torti

can't get deformation vector field

@nwschurink and @SouthAmericaB , Thanks to Niels for your suggestions to convert the deformation field to a numpy array, or to write the image to disk. I tried both and...

Can't access or save data array in transformix deformation vector field

Hi all, I've gone through quite a painful process to finally get a deformation file exported. But unfortunately the entries are all zero. I initially performed a registration in Anaconda...

Location "unknown" when trying to register 3D volumes

Hi Kasper, Thanks for your support. I've attached one such file. [elastix_20200506_0843.log](https://github.com/SuperElastix/SimpleElastix/files/4620624/elastix_20200506_0843.log) I've more recently switched to a simpler problem: Trying to register an MR to MR image where the...

Location "unknown" when trying to register 3D volumes

Thanks for the suggestion Kasper. Unfortunately the same error persists: `# Read in the 3D stack of Fixed DICOMs:` `FixedReader = sitk.ImageSeriesReader()` `FixedNames = FixedReader.GetGDCMSeriesFileNames(FixedDir)` `FixedReader.SetFileNames(FixedNames)` `FixedIm = FixedReader.Execute()` `#...

Problems with resampling prior to registration

Hi Kasper, Thanks for your support. I was only parsing the OutputPoint values. I've not been able to make much sense of the index values (InputIndex, OutputIndexFixed, OutputIndexMoving) since the...

> 1. Create an empty reconstruction with pycolmap: add images and cameras but no 3D points

@iperper Thanks for the guidance. I have provided the optional args `camera_mode` and `image_options` to `reconstruction.main` as above. And while I can vary the values for `camera_mode` and `camera_model` and...

> 1. Create an empty reconstruction with pycolmap: add images and cameras but no 3D points

@iperper Thanks very much for your support. Setting `ba_refine_focal_length` and `ba_refine_extra_params` to False has done the trick!

Suggested extensions aren't installed when connecting over SSH

If anyone is interested, a work-around is to configure VSCode to automatically install the required packages for all remote SSH connections. This can be done by editing the settings.json file...