Colleen Kellogg

Sorry for the delay coming over to this thread! Would love to see if this is possible with the PR2 database. Let me know if there is anything I can...

Hi there, I just wanted to follow up on this thread and see if any progress has been made towards documentation for the various beta diversity metrics (like http://scikit-bio.org/docs/latest/generated/skbio.diversity.alpha.html but...

Hi, I am also having problems with SeqPrep running on a Mac with OSX 10.9. I installed macports and also gcc v. 4.7 and compiled using make CC=gcc-mp-4.7. Everything seemed...

Hi! So, in response to this question: > Is your pr2 data a proper (SQL) database? Or a set of tabular files? Something else? It would be interesting to think...

Thank you both! (sorry for the delay in my response). Yes, I installed the pr2database package in R (before I wrote here), but then was struggling to figure out how...

Well, since I often work with amplicon sequencing data, my typical mode of operation is to QC the data and the classify the reads against a reference database using sequence...