C. Titus Brown
C. Titus Brown
from slack conversation: olga:is there a benchmarky paper showing sourmash’s performance in speed, cpu, memory, accuracy for contamination detection? trying to convince nextflow core devs to use it for rnaseq...
see https://github.com/dib-lab/sourmash/pull/587#discussion_r245368621 by @taylorreiter - "It would be useful if we could have a threshold for the intersection -- like if the hash occurs in 80% of signatures, give it...
https://github.com/ctb/2017-sourmash-cluster
```python >>> import sourmash.save_load >>> with sourmash.save_load.SaveSignaturesToLocation("empty.sig.zip") as ss: ... pass ```
per https://github.com/taxburst/taxburst/issues/54. Not sure what we should be doing here, though.
over in https://github.com/sourmash-bio/2025-sourmash-databases-doc-template, I'm trying to standardize our database listings so that they can be described programmatically & templates used to generate the docs automatically. It would be nice to...
A few issues that cropped up with #3754 (and, well, everything before that 😆 ), some of which are handled in https://github.com/sourmash-bio/2025-sourmash-databases-doc-template/ but should be documented. * use consistent-ish naming...
transferring items from https://github.com/sourmash-bio/sourmash/issues/3504, as well as others - TODO: * investigate and summarize missing tax records; * investigate and summarize missing genomes - ref https://github.com/sourmash-bio/sourmash/issues/3599 as well as list...