C. Titus Brown

as per charcoal https://github.com/ctb/2020-charcoal-sankey, could use sankey flow diagrams in #35

this seems like generically useful code that ensures that the various dataframes are all copacetic and synchronized... ``` SampleDFs = namedtuple('SampleDFs', 'gather_df, all_df, left_df, names_df') def load_dfs(outdir, sample_id): # load...

thoughts on taxonomic comparisons, protein searches, and challenges therein

1

I'm becoming rather fond of the protein search (#40) and want to combine DNA and protein searches (#48) but keep on running into mental problems about how to deal with...

I increasingly like the idea of generating a _combined_ report for DNA and protein matches per #40. This would add another layer of reporting. In addition to reporting summaries across...

Continuous integration and code coverage

2

## Create drone.io build - Login to [drone.io](http://drone.io/) and press "New Project" - Select github - Find your project! - Copy this in for your build script: ``` pip install...

- [x] some announcements - [x] who we are - [x] what we do - [x] some of our background - [x] questions about YOUR background! continuous integration; testing; doc...

- [ ] Show reST documentation again on github -- [library](https://github.com/dib-lab/2016-pycon-tutorial-project/blob/master/doc/library.rst) and [command-line](https://github.com/dib-lab/2016-pycon-tutorial-project/blob/master/doc/command-line.rst) - [ ] Mention GitHub rendering! Motivate sphinx/RTD. - [ ] Goals of using sphinx: table of...

Here's a stub for setup.py. You'll have to edit the `name` field, as PyPI won't accept duplicate project names. You'll create this file in your project root. ``` from setuptools...

Note: PR into https://github.com/dib-lab/charcoal/pull/239 Switch up conda install to what we do over in sourmash

Update sourmash deps to 4.8.4 and snakemake to 7.32.4. Note: sourmash update had to deal with new LineageTuple stuff from https://github.com/sourmash-bio/sourmash/pull/2437. Fixes #237