C. Titus Brown
C. Titus Brown
what was generated, where it is, etc. could also be a link to the docs.
see https://github.com/jeanzzhao/AL_onemetagenome/pull/1/ for using pysam to help with read names.
the code for grabbing NCBI genomes by accession was moved over to https://github.com/ctb/get-some-ncbi-genomes/ where I plan to maintain it (will eventually be moved to sourmash-bio, too). should add tests to...
The [docs site](https://dib-lab.github.io/genome-grist/) is hard to navigate and subdivided badly, in part because of mkdocs and the way it does sections on pages vs different pages (or at least the...
https://github.com/dib-lab/genome-grist/pull/255 and https://github.com/dib-lab/genome-grist/pull/259 added `skip_genomes` in the config file, and added code in the `Snakefile` to handle it. I think this was short-sighted - where genomes need to be ignored,...
## before release make sure `make` works! ## release Cut a new release on releases page; paste in release notes. Upload to PyPI: ``` git switch latest git pull origin...
https://twitter.com/remilouf/status/1574033644951330821
Over in https://github.com/dib-lab/genome-grist/pull/107#issuecomment-1019274050, @mr-eyes asked - > > Wanted to ask, was there a specific criterion for selecting the abundtrim and trimming parameters? I can't imagine how it will biologically...
I'm seeing some indications that `tempdir` in `system.conf` isn't being used/set properly 🤔