C. Titus Brown
C. Titus Brown
The `GraphLabels` object should somehow be added into `tests/test_tabletype.py`. Relevant: #1758.
https://en.wikipedia.org/wiki/Fowler%E2%80%93Noll%E2%80%93Vo_hash_function#FNV-1_hash found via SRA Taxonomic Analysis Tool, see [info here](https://github.com/dib-lab/sourmash/issues/299)
http://robpatro.com/blog/?p=494
This is an issue for listing the persistent irritants that I'd like to fix for 3.0! * better / more systematic logging, verbosity, and in-run reporting to user. (e.g. "fix"...
After #1371 (compact De Bruijn graph work) and #1372 etc. (assembly), can we now input/output [FASTG](http://fastg.sourceforge.net/) or [GFA](https://lh3.github.io/2014/07/19/a-proposal-of-the-grapical-fragment-assembly-format/)? See Twitter conversation [here](https://twitter.com/ctitusbrown/status/731884141088645121). Also, what about abyss internal format - worth...
I'm getting a lot of these on `build/build.sh`: ``` ERROR: Failed to load image at "https://latex.codecogs.com/svg.latex?%5Ctextstyle%20h%28x%29" (URLError: ) ``` it looks like it's coming from this command in build.sh, ```...
I'm poking around my new manubot paper, and a few things tripped me up. I've worked through them, but thought I might mention them here and (if I'm right about...
I use binder a lot for teaching short workshops (thanks nice people!) and when we use the shell via RStudio or Jupyter terminals, the default prompt is super long and...
Hello, I'm debugging a salmon install problem with conda. I don't have time to double check, but it looks something like: * if you install salmon 1.1.0, you get a...
Note: PR into https://github.com/spacegraphcats/spacegraphcats/pull/449 The question at hand: can we do terrible things by (a) [shoving sourmash signatures for PFAM into SQLite](https://github.com/ctb/2022-sourmash-sqlite) and then (b) using those signatures to annotate...