C. Titus Brown
C. Titus Brown
can we use it to store SBTs and minhashes? (c.f. https://github.com/dib-lab/sourmash/) can it be used as a Jupyter Notebook file system? what about a purely JavaScript upload/download app?
this worked nicely: ``` % for i in anno.*.tar.gz; do osf -p jzpxn -u [email protected] upload $i osfstorage/prokka/$i; done ``` but was entirely silent, which is a frustrating default :)
...and run by various people to make sure it's clear! I'll take this on.
http://rclone.org/
This PR rearranges the docs to according to the https://diataxis.fr/ structure, per https://github.com/sourmash-bio/sourmash/issues/2054. New pages: * [A heavily revised index page](https://sourmash--2184.org.readthedocs.build/en/2184/new.html) * [A guide to the internals of sourmash](https://sourmash--2184.org.readthedocs.build/en/2184/sourmash-internals.html) ---...
we have a lot of "breaking" issues that are waiting for v5 - see the ["5.0" tag](https://github.com/sourmash-bio/sourmash/labels/5.0). it will probably take a few weeks, or even a month or two,...
github moved its default branch name to `main`, away from `master` (see [article](https://www.theserverside.com/feature/Why-GitHub-renamed-its-master-branch-to-main) for background) but made it configurable on repos first. We (for whatever reason ;) standardized on `latest`,...
Fixes https://github.com/sourmash-bio/sourmash/issues/2193 Fixes https://github.com/sourmash-bio/sourmash/issues/2194 This PR fixes the direction of containment for the ANI calculation, per #2193. TODO: - [ ] rename `containment_ani` to `contained_by_as_ani` - [ ] write more...
tl;dr Yay ANI! https://github.com/sourmash-bio/sourmash/pull/1967 Boo ANI on translated sequences unless max_containment used :(. Longer backstory: For translated DNA x protein, we will have many spurious proteins (unless we use orpheum...
in charcoal we are trying out 6-frame translations to do decontamination: https://github.com/dib-lab/charcoal/pull/120. The gather output that is reported is pretty lousy because it doesn't adjust for the (large) number of...