Miguel Camacho

DESeq2 variance stabilizing transformation

1

In DESeq2, after applying getVarianceStabilizedData, all counts = 0 are transformed to negative values. These correspond to 2/3 of the values in the matrix. I am worried that this will...

alpha value structSSI hierarchical FDR

1

I am applying your [workflow](https://bioconductor.org/help/course-materials/2017/BioC2017/Day1/Workshops/Microbiome/MicrobiomeWorkflowII.html#multitable_techniques) to analyze my metagenomics data. Thank you for publishing this versatile and powerful guide. I want to determine potential taxa associated to the rhizosphere of...