Marcus D. Hanwell

Results 170 comments of Marcus D. Hanwell

I am not sure I understand what such a tool should do, and why you feel this assumption is in place. We don't specifically assume anything about the projections or...

If you try the latest nightly builds we have this implemented for HDF5-based formats - supporting subvolumes or striding. How large is the data you mention, what format are you...

If you have HDF5 with a volume we now have a generalized 3D array interface discussed [here](https://tomviz.readthedocs.io/en/latest/data/#hdf5-subsampling), and you can even resample. We have not generalized it to TIFF, it...

I have been tracking this, the Python HDF5 module is tougher to package with Tomviz than expected, and it the primary blocker for using a Python library to support NeXus....

We already have SciPy and NumPy in the Tomviz package for all three platforms, and we recently added Python based readers and writers. The HDF5 library is packaged, and used...

You may have to fill me in on what you think is missing. If the detector is rotating around the sample, but the rest of the geometry remains the same...

We read and write these in the external pipeline code, see [here](https://github.com/OpenChemistry/tomviz/blob/master/tomviz/python/tomviz/executor.py#L529) for the write routine. I can dig into this a little more, there may be some bugs remaining...

Good summary, like I said reconstructions especially want a child output that can have further operators applied without rerunning the reconstruction again. For other things we likely want to extend...

I think our binary packages are on 1.16 as 1.17 wasn't ready in time for release. Can we add a check based on the numpy version to workaround this? Definitely...

The operator needs to apply its offsets in Python so that they can be run, much like the tilt axis tool