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Pathogenicity prediction of bacterial genomes
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paprbag issues
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Hi Carlus, When I try to predict using the default forest with a sample fasta file through Biostrings::readDNAStringSet, I got the following error: `Error in GetOligonucleotideFrequency(Reads, k = k, prob...
> library(paprbag) > library(ranger) > # define your path to the previously saved forest > Path2Forest # define independent prediction data > Path2ReadFiles # define output > OutputFilename saveLocation Predictions_paprbag
Hi, I tried different R (3.4.0, 3.2.3) and ranger (0.7.0 and github-version) combinations, but the first example already seg-faults in "ranger_rangerCpp" with " cause 'memory not mapped' ". I am...