OligonucleotideFrequency Error

[GroovyGG]

Hi Carlus,

When I try to predict using the default forest with a sample fasta file through Biostrings::readDNAStringSet, I got the following error:

Error in GetOligonucleotideFrequency(Reads, k = k, prob = T, symmetric = SymmetricFeatures) : task 1 failed - "attempt to set 'colnames' on an object with less than two dimensions"

Is this a known issue? Thanks

[crarlus]

Hi and thanks for your interest in Paprbag.

Hmm, in R you typically get such errors when you supply only a single datum (e.g. a single read in this case) instead of a set of reads.

So does your fasta contain more than one read?