cpystan
cpystan
This case is not included in the training. And I think it is a good suggestion to conduct a further cleaning when training.
On BRCA, one epoch training takes about 1 min when we use 4 A100 GPUs. But it takes much more time in inference. It needs about 10 mins to process...
About 1000 pairs , train for 10 hours totally.
we use the“DX" slide.
Yes. Some cases have several DX slides. For this situation, we choose 'DX1'.
We ignore the same case in the val or test. So the total slides will be a bit fewer.
> Why was the DX-labeled WSI slice chosen to be kept while other slices were deleted? Because this is a "multiple slices-single report" paired dataset, and the other slices also...
Yes, the patch embeddings are directly fed to the classic models. The difference between our model and baselines is the encoder-decoder.
> Encountered the same problem. I'm also confused by the classification model provided in the baseline folder. When checking files in the baseline folder, models for classification were found but...
We find that the checkpoint we uploaded is wrong and should not be used for test. We are so sorry for our mistake. We will upload a new ckpt later.