genmap

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Hi, Thank you for providing a useful tool. I have got an issue ，I do multi-genome analysis and how do I know about a genome and which other genomes have...

bernicegu

Hi, Thank you for providing a useful tool. I have got an issue though while computing (20, 2)-mappability with the prebuilt index of human genome (grch38-no-alt). It uses up the...

kbchoi

interpretation of output values

1

Hi, I've used your pre-compiled index files to compute mappability with `-K 150 ` assuming this is a good approach to compute expected mappability for 150bp reads sequencing (I've tried...

edg1983

Hallo, thank you for your tool! I used it according your manual so I have a txt file with mappability score for my reference genome (150,2) Could I use the...

AstrMary

can genmap map run with very large values

6

I would like to compute mappability of long reads on a repetitive plant genome to evaluate the efficiency of long reads (Pacbio or ONT) Can I use large values like...

splaisan

Computing only binary mappability

4

I think it is oftentimes useful to have a binary mappability of data, when you are only interested in completely unique regions. Up until now, I have been just calculating...

joshuak94

Support compressed fasta files as input for indexing

3

cpockrandt

I have increased the memory to 800G, but it still reports out-of-memory. I have also tried to increase "-S" to 64, but the error still exists. If there is a...

guandailu

All new Macs are now Apple silicon based, which as far as I tell, does not support popcnt. Any chances of future modifications to be able to run on Apple...

gsherloc

I was planning to compute Kmer of 120 bases with 10% error, when i encountered error E>4 is not supported. are you planning to add support for it? is there...

ranjit58