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                                            Paola Cornejo

Can I use biostar160470.jar with a psi-tBLASTn checkpint file as query?

Yes, I tried the next command: `cat A_thaliana_mMit_psiblast_10it.chk | /space31/PEG/pcornejo/ncbi-blast-2.3.0+/bin/tblastn -num_threads 20 -db blastdb_P_bachei -outfmt 5 | java -jar /space31/PEG/pcornejo/jvarkit/dist/biostar160470.jar -p /space31/PEG/pcornejo/ncbi-blast-2.3.0+/bin/ -d blastdb_P_bachei | xmllint --format - > test_P_bachei_tblastn_F5.out`...