nltools
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cosanlab
Python toolbox for analyzing imaging data
# Changes for new release 1. Support multiplication from the left (only with lists!) 2. Dramatically speed up `Brain_Data.similarity` and support rank correlation #308 #316 #404 3. Add tests for...
I guess at some point we could write a paper, but for now, let's just provide info for how to cite the zenodo DOI.
I'm running into issues using the regions method. ```python (post - pre).ttest(threshold_dict={'unc':.001})['thr_t'].regions(min_region_size=27) ``` ```python --------------------------------------------------------------------------- IndexError Traceback (most recent call last) in ----> 1 (post - pre).ttest(threshold_dict={'unc':.001})['thr_t'].regions(min_region_size=27) ~/anaconda3/lib/python3.8/site-packages/nltools/data/brain_data.py in regions(self,...
@ejolly does the onsets_to_dm() have the ability to add weights? Sometimes we may want to weight the intensity of a value something other than 1, such as parametric modulation designs....
https://github.com/cosanlab/nltools/blob/a2a54df71972f41e4efc77dd861fd07bd214f0ec/nltools/data/brain_data.py#L958
Pandas do not use the module Panel in the latest versions. Brain_data function uses in its code. How to deal with this? Thank you
Dear nltools developers, Thanks for your work of nltools. I am using nltools to perform representational similarity analysis. There were two task runs in my design, so I defined a...
When importing the `Brain_Data` class from `nltools.data` I get a `ModuleNotFoundError` for `sklearn.linear_model.base`. ### Steps to Reproduce Python version: 3.9.7 Package versions: ``` scikit-learn==1.0.1 nltools==0.4.5 ``` ### Current Behavior ###...
In brain_data.py at line 1108 the same (non-cross validated) weight map is returned for each cross-validation fold because the initial classifier object is used instead of the cross-validation one. I...
Dear nltools team, Is there a way to us the nltools function for classifcation/prediction across several tasks? So training a classifier on data from one task and testing on another....
