nltools
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cosanlab
Python toolbox for analyzing imaging data
@ejolly, just tried using the new hdf5 loading for an older file and encoutered this error message: ```python --------------------------------------------------------------------------- TypeError Traceback (most recent call last) Cell In[33], line 16 12...
This PR adds support for the following additional MNI templates: - 2009c 1mm and 2mm - used by fmriprep - 2009a 1mm and 2mm - used my nilearn Our current...
I am trying to run your plot_multivariate_classification.ipynb example. But when I run fetch_pain(), I get this error `--------------------------------------------------------------------------- ValueError Traceback (most recent call last) [/Users/kanamatsuyanagi/fmri_prep/plot_multivariate_classification.ipynb](https://file+.vscode-resource.vscode-cdn.net/Users/kanamatsuyanagi/fmri_prep/plot_multivariate_classification.ipynb) Cell 5 line 1 ---->...
Hi, It would be nice to have a feature for implementing slice time corrections for first level modeling. Or, at least to provide some documentation about how nilearn treats slice...
Our `stats.procrustes` is literally just the source code for `scipy.spatial.procrustes` so we should replace it with an import: https://github.com/cosanlab/nltools/blob/8f034dbbbb788fc09cda9be3bd26cdf5eb5e421f/nltools/stats.py#L1435
# Goal The goal of this PR is prep a new version of `nltools` that uses our new package [`burnt-ends`](https://github.com/cosanlab/burnt-ends) (currently private during development) as a core dependency for common...
Currently we let the `srm` external module handle this which throws the error, however this works with `method='procrustes'` because we manually pad matrices before alignment. @ljchang I thought the probabilistic...
This PR updates nltools to accomodate the new functionality provided by nilearn version 0.10.4 to download and upload to neurovault. Addresses Issues: #429 and #422
@ljchang Separate from the issue we were having about hosted datasets on neurovault going missing, currently we can't build our docs because `nilearn` has changed their API and removed `_get_dataset_dir`...