Nicolas Fernandez

Hi @darribas, I think this is the approach @ljwolf is taking here https://github.com/pysal/libpysal/pull/457/files on this pull request.

The 4.6.2 release has fixed this - see [updated Google Colab notebook](https://colab.research.google.com/drive/1KCCnbwTvg-omi8Fz9UHq0bn1NSfTPl90?usp=sharing)

Hi, I was testing some other parameters for the alpha shape and it appears to not be behaving as expected. I'm seeing some holes in the multipolygon that appear to...

I think I have a solution that is working to remove these polygons which represent holes made by more than one touching polygons (I'll call them hole-polygons). I calculate which...

I'm also interested in trying out the single cell clustering examples on Google Colab including the examples show here https://developer.nvidia.com/blog/accelerating-single-cell-genomic-analysis-using-rapids/ @saketkc I'm seeing an error with you Colab notebook ```...

Hi @ivirshup, I went ahead and used Kaggle to make the example notebooks since our test AnnData exceeds Github file size requirements. The kaggle notebooks reproduce our issues. Let me...

Thanks @ivirshup, so I can re-write the anndata and then read it correctly? Would you be able to fork the kaggle notebook to demonstrate?

> Thanks! I can confirm the bug. > > Any chance you know what version of anndata wrote this file? Also, this particular file was generated using the HDF5 C++...

Thanks @ivirshup, yes I didn't realize this Anndata file was not written by Anndata but by a C++ HDF5 library in a custom manner. We hadn't run into the issue...

Thanks that sounds good @ivirshup I'll email you.