Cornelius Roemer
Cornelius Roemer
I've noticed I'm not entirely sure myself how the phylogenetic placement algorithm works exactly and the docs don't contain the details I'm interested in. Open questions: - Do we treat...
Right now, when I copy all of the text of the mutation tooltip, it isn't really as nice as it could be. Once #734 is implemented, it would be nice...
Uploading a dataset with strain names as they came out of NCBI/Genbank, I noticed that the web interface becomes unusable due to massive tooltips covering everything. Long strain names should...
When a frame shift occurs in a part of the genome that is part of two genes, like the overlapping region of ORF9b and N in SARS-CoV-2 and as happened...
When I upload a truncated sequence, that's missing half of S gene for example, the `mutations on branch` in tree view display "reversions" for parts of the sequence that were...
It seems that Nextclade web may not necessarily get faster after a certain number of threads is reached. In particular, it may even get slower, as the setup time seems...
Many parts of the docs are SARS-CoV-2 specific. It would be good, if all SC2 specifics were put in boxes to not confuse readers who may only be interested in...
Right now, we only categorize private substitutions into a) reversions, b) labeled, c) unlabeled. Since true reversions of deletions are very unlikely (unless there's contamination/coinfection/recombination) they contain valuable QC/recombinant-detection information....
(Monkey testing find: Funny bug that's actually somewhat of a realisation of feature request #639 and thus useful) When going back and forth under certain circumstances (unlikely to be encountered...
Raised by Ricky Sucgang on Spheres Zoom In the mutation summary tooltip, we currently show nuc and aa mutations as separate lists. It would be nice to match them up....