Cornelius Roemer

@tjohns Has there possibly been any progress on answering this question? Would be great to know. It shouldn't be too difficult to answer @Apisov's question.

Unfortunately it seems to be impossible to actually test this unless you are a whitelisted developer, which I am sadly not. I'm a bit surprised that Google doesn't answer questions...

@falkorichter I figured from the repo that "we" means Austria. I know that Germany uses 23, and I haven't heard of anyone else using anything else. In the media and...

Thanks for pointing to the medaka issue @MarieLataretu So I guess the lab is not using the suggested workaround: `solved with sup (super-acc) basecalling and respective medaka model` and neither...

I dug into your auspice.json and you'd have to change the genome annotation here, add ORF1ab: ``` "genome_annotations":{ "E":{ "end":26472, "start":26245, "strand":"+", "type":"CDS" }, "M":{ "end":27191, "start":26523, "strand":"+", "type":"CDS" },...

@russcd Thanks for your quick reply! It depends on what you want to do: switch to Orf1a Orf1b then you don't need to do anything to auspice.json or change auspice.json...

Thanks! I confirm the coloring works now. Have you made a conscious decision to use ORF1ab as opposed to the somewhat more conventional ORF1a and ORF1b? At least a/b are...

I let you decide! It's just a pain to convert. I created a Stackoverflow Q&A to make it easy for anyone to convert just by googling "How to convert from...

Maybe the lineage assignment was done using a previous = slightly different tree? @AngieHinrichs should know, I'm just guessing

I haven't! I was thinking this could exist in command line, but didn't look for it. I prefer the web interface due to convenience, to quickly drop a sample. I...