Lee Cooper
Lee Cooper
The cuCIM whole-slide image reader should support reading by microns-per-pixel (MPP) or by magnification. Currently, the user has to perform calculations to determine if a level with the desired resolution...
cuCIM read_region() is a highly optimized routine for reading from TIFF-like whole-slide images including svs. We should incorporate cuCIM as a tile source. https://pypi.org/project/cucim/
@manthey @dgutman Let's collect a list of users / deployments and feature them on https://digitalslidearchive.github.io/digital_slide_archive/. Boston University - https://mira.bu.edu/ cBioPortal Indiana University - Mehdi Nassiri Jansen - https://www.sciencedirect.com/science/article/pii/S2153353923001517#ec0005 Buffalo -...
Clicking escape when the brush tool is selected leaves a residual graphic on the image. This is not an element and cannot be deleted, only removed by refreshing the page.
Right-clicking to complete a polygon does not work correctly when that polygon is within another annotation. Instead of completing the polygon, it raises the menu to edit or delete the...
When displaying nested dictionaries, the inner dicts are rendered as serialized strings. Ideally, the metadata panel could display this using a tree view. Also, if possible, respect the key order...
Write a simple function that applies a single set of parameters (tile size, overlap, chunk size) to a nested list of slides to generate a study for each list of...
Provide basic documentation on the intent, installation, and utilization of the package. Document the fields and data structures produced by histomics stream.