Philip Cook

Results 45 issues of Philip Cook

The public key for R Ubuntu packages expired and is now replaced. Also bumped the container Ubuntu version to focal, and reduced the number of build layers.

I couldn't find any written instructions for contributing code. I made a start on a wiki page https://github.com/stnava/ANTsR/wiki/Contributing-code-to-ANTsR

Related to ANTsPy issue https://github.com/ANTsX/ANTsPy/issues/362 @ntustison , I found that `antsRegistration` and `antsMotionCorr` will fail with very small voxels. In the attached archive, I used RNifti to edit the pixel...

bug
enhancement

Thought I'd share some information I just figured out. Not necessarily a bug but a potential cause of user confusion. If you have a call to ReadImage for some value...

notes about usage

Since we are currently building against a release ITK version, and have resolved a number of issues affecting external builds, I was thinking to bump the version to 2.4.0 in...

**Is your feature request related to a problem?** Possibly, https://discourse.itk.org/t/trying-to-access-labelgeometryimagefilter-in-itk-5-2-1-post1-python-package/4538/6 **Proposed new features** Use updated new implementation https://itk.org/Doxygen/html/classitk_1_1LabelImageToShapeLabelMapFilter.html

wouldbenice
feature request

We understand that filling out the template takes time. But most issues are specific to particular systems or data, and we need to know as much as possible about the...

`PrintHeader /share/apps/fsl/6.0.0/data/standard/MNI152_T1_1mm.nii.gz` Output: ``` Spacing [1, 1, 1] Origin [-90, 126, -72] Direction 1 0 0 0 -1 0 0 0 1 Size : 182 218 182 Image Dimensions :...

bug

Just wanted to add a usage note. The sform is now the preferred method of defining the rotation and translation from voxel to physical space. Previously, the quaternion was preferred....

notes about usage

The default cache directory of "~/.keras/ANTsXNet" is troublesome for Singularity users because singularity has to run as the user calling singularity, so users either have to mount their own home...