Philip Cook
Philip Cook
You'd need to apply the transform and then see if it makes the alignment of the images better or worse. Re: Translation, yes I'm saying I've found it better to...
No, you can use the original images. It was just to visualize what `-r` was doing.
Is it necessary to handle the 5D convention explicitly? I think the ITK NIFTI reader can read it into an ITK vector image. In NIFTI the 4th dimension is reserved...
I believe this issue was fixed by https://github.com/ANTsX/ANTs/commit/3735311732d3b8f8bcb8c95fe386aac3b657c7e2
Unfortunately I don't think there's a unified style in ANTs. I think the usual *nix convention is square brackets as options, but that gets confusing with our use of brackets...
It might have been done, but not by us https://neurostars.org/t/converting-affine-matrices-from-afni-3dvolreg-to-fsl-or-itk-ants/338
If anyone reading this uses PBS and has insights, please chime in. I don't use this system so I would be OK with changing the script so that jobs with...
http://docs.adaptivecomputing.com/torque/4-1-3/Content/topics/commands/qstat.htm If this is accurate, C is only used for completed jobs, so a PR that marks jobs as complete if they are in status C should not break compatibility...
Thanks @gdevenyi . I have attempted 2 but couldn't make it work. 3 seems do-able but would need some testing and review of the scripts to not fail with `bash...
https://github.com/ANTsX/ANTs/wiki/Warp-and-reorient-a-diffusion-tensor-image