Constantin

Hi Hao, that looks very cool. I am a bit confused about the code in your README, where do you define the logic of e.g. `StatCompare`? Best, Constantin

Thanks for the explanation. > I did not explicitly provide the source code for StatCompare and GeomBracket in ggcompare because, in my view, these are just two ggproto objects Well,...

That's great :) And congrats on the nice code. It is quite readable (even without comments) and your approach to do the calculation in `compute_layer` is a better choice than...

Hi adRn's, as the maintainer of `glmGamPoi` and contributor to `MatrixGenerics`, I am sorry to hear about the difficulties that you encountered with switch of the `useNames` arguments. I think...

For a full list of all available transformations, see https://github.com/const-ae/transformGamPoi-Paper/blob/master/benchmark/src/transformations/transformation_helper.R#L333. But if this is really just about transforming your data, that you have loaded as a SingleCellExperiment object, you would...

The alpha is just forwarded to https://github.com/const-ae/transformGamPoi-Paper/blob/master/benchmark/src/transformations/transformation_helper.R#L199

Hey, thanks for reporting the issue. The `compute_lfc_se` is one of the less used features of glmGamPoi, so it is particularly useful to get feedback on this :) The standard...