connectomemapper3
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connectomicslab
Connectome Mapper 3 is a BIDS App that implements full anatomical, diffusion, resting/state functional MRI, and recently EEG processing pipelines, from raw T1 / DWI / BOLD , and preprocessed EEG data...
Dear sebastien, Greetings. I am using the singularity image to run CMP3 on cluster, and found error saying this for both parcBrainStem and parcHippo stage: ___ 220924-21:08:37,453 nipype.workflow INFO: [MultiProc]...
Dear Sebastian I ran the cmp3 for 8 subjects using parallel run on my PC ( ubuntu 20.04, 24 cores and 16 GB Ram). After running the program for about...
I installed and ran the GUI interface, however the window that opens is empty,does not contain any elements. NO error is displayed. Thank you
As many of us know, it is very helpful to do "sanity checks" of the in-between steps to figure out where and what went wrong in the pipeline. This PR...
**Goal** Serve as quality assurance **Tasks** * Computes and plots of connectome-specific summary statistics as in [ndmg](https://github.com/BIDS-Apps/ndmg): * Implement a `load_graph()` which takes the full path of the connectome to...
Following #18 to integrate MRtrix3 MSMT-CSD for estimation of fiber orientation distribution Tasks I see so far: - [ ] Implementation of a new Nipype interface specific to MRtrix3 MSMT-CSD...
Following the issue #18 to integrate FSL topup correction ([https://fsl.fmrib.ox.ac.uk/fsl/fslwiki/topup](https://fsl.fmrib.ox.ac.uk/fsl/fslwiki/topup)) in the diffusion pipeline Tasks I see so far: - [ ] Implementation of a new Nipype interface specific to...
While adopting BIDS in CMP3, the way CMP is working changed dramastically and this feature, available in previous versions, is not working anymore for the moment. However, this is an...
It should includes: * Acquisition metadata * Freesurfer cortical surfaces * Multi-scale parcellation * Boxplots of ROI volumes for Quality Assurance at group-level
It should include: * Summary of acquisition metadata * Preprocessing results (denoising, bias field, current distorsion correction, distorsion corrrection using fieldmaps) * Registration overlay * FODs * (Tractogram) * Connectivity...
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Connectome Mapper 3 is a BIDS App that implements full anatomical, diffusion, resting/state functional MRI, and recently EEG processing pipelines, from raw T1 / DWI / BOLD , and preprocessed EEG data...