connectomemapper3
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ENH: Compute and plot network statistics of structural and functional connectivity matrices
Goal Serve as quality assurance
Tasks
- Computes and plots of connectome-specific summary statistics as in ndmg:
- Implement a
load_graph()
which takes the full path of the connectome to load - Implement a
load_graphs()
which takes the BIDS root directory, the output directory, the (sub)list, and the parcellation scheme. It will callload_graph()
for each subject / session / parcellation scale. - Implement a
compute_network_metrics()
which:- differentiate structural and functional connectivity matrices and
- compute for each connectivity matrix scale network measures and statistics (Number of non-zero edges, Max Local Statistic Sequence, Clustering Coefficients, Degree sequence, Edge weight sequence, , Eigen value, betweenness centrality, mean/median connectome)
- Implement a
- Integration of plots in the processing summary report of the diffusion pipeline (#10)