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ORF Quantification pipeline for Alternative Splicing

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I have tried running both the run_ORQAS.sh script and running the pipeline step by step. I have tried using my ownrnaseq and riboseq data and the sample data. I keep...

Dear authors, I've a question related to the procedure that you followed to classify translated and untranslated ORFs after finishing running ORQAS. How do you exactly determine the cut-off values...