Combiz Khozoie

API endpoint pagination key 'max' needed for tasks

2

The API endpoint for tasks (`https://tower.nf/openapi/index.html#get-/workflow/-workflowId-/tasks`) paginates the results, returning the first ten records. However, there is no 'max' key available for this endpoint to control the number of records...

For example with the question: ``` - Class: cmd_question Output: Use the SummarizedExperiment::assayNames() function to obtain a list of assay names for your sce. CorrectAnswer: omnitest('SummarizedExperiment::assayNames(sce)') Hint: You can load...

When using the `view()` command with a `data.frame`, the data viewer does not allow for the selection of values in a single column. Possible ways to enable this feature could...

row_attrs from create loom vs add.row.attribute

1

I've attached row and column attributes at loom file creation as follows: - ``` >create(paste(LOOMDIR, "test.loom", sep = ""), data = counts(sce), layers = list(logcounts = logcounts(sce)), gene.attrs = as.list(rowData(sce)),...

The 'neurogenomics/EWCE' package should be updated to use the latest version at `NathanSkene/EWCE'. This will require a refactoring of the code due to major updates to EWCE.

The LIANA framework simplifies cell-cell interaction analyses with multiple tools: https://github.com/saezlab/liana

Unexpected urban dictionary prompt

1

After submitting the `changer::changer()` command the following prompt appears without any context. Would be useful to know why this is being asked this as part of a package rename function....

RANN.L1 remote dependency

11

I'm creating a package which requires "RANN.L1" as a dependency. The package "RANN.L1" is therefore listed under `Imports:` in the `DESCRIPTION` file of the package, and the remote dependency location...

feature: add automatic operation ID shortening for LLM compatibility

1

## Describe your changes Add max_operation_id_length parameter to FastApiMCP that automatically shortens long operation IDs to fit within LLM character limits. The implementation preserves semantic meaning by prioritizing the most...

## Describe your changes When converting OpenAPI schemas with Union types containing arrays (e.g., Union[str, List[str]]), the array variant was missing the required 'items' property. This caused validation errors with...