Colin J. Brislawn
Colin J. Brislawn
## Feature Add tidiers for objects from the [vegan](https://github.com/vegandevs/vegan) package for community ecology. This reopens old issue #23 Example usage: ```R adonis(dist.jaccard ~ group, data = df.samples.groups) %>% tidy() ```...
Good evening, I have had a great experience using vsearch and recommend it to everyone. The documentation is clear and concise and makes vsearch very accessible. I'm happy to see...
Good morning, I just made this plot, and the legend has super long titles: Instead of passing a typical column, I defined color pallet using `ly_points(x, y, color = interaction(col1,...
I was looking for a better example of `filter_samples_from_otu_table.py`, and found a great one inside the parse function. https://github.com/biocore/qiime/blob/master/qiime/parse.py#L695 This PR makes this example visible on the website.
The script `assign_taxonomy.py -m sortmerna` works great! However, the resulting taxonomy sometimes omits unassigned levels. In this output, `g__; s__` should be at the end of the second line, but...
Thanks to #3, there are excellent examples of using the `biom` API. There are also excellent examples in the manpage, but not on the website! For example, the command `biom...
Thanks for developing this use of PICRUSt! Your idea of dynamically retraining based on dada2 reads is a great fit for any program that does not use 'close-ref' OTUs. I...
>All future development on Robust Aitchison PCA has been moved from this repository to [Gemelli](https://github.com/biocore/gemelli). Good to know! Can we include this depreciation notice on the library page? https://library.qiime2.org/plugins/deicode/19/ (Deicode...
Sorry to bother you today! This is a very small bug that tripped up a collaborator for a moment