Chris Mungall

Consider support for obographs json format

6

Note that we now have a proposed JSON representation of OBO that would obviate the need for special purpose parsers. Your comments as a developer would be most welcome: -...

Add option to output column headers

1

q is a marvelous tool, thank you! One thing that would be very useful is an option to emit column headers in the output, analogous to `-H` for input. These...

Provide a way to include double quotes within strings

2

I am trying to generate facts where an argument is a symbol, and contains double quotes. E.g. a file `s.csv` with the contents: ```bash "quoted string" ``` I have tried:...

Is there support JSON-LD framing when serializing? See: http://json-ld.org/spec/latest/json-ld-framing/ The [pylod](https://github.com/digitalbazaar/pyld) package has a method pyld_jsonld_from_rdflib_graph which does the right thing, but I would rather simplify dependencies and use rdflib...

Proposed extensions to "display relationships in class hierarchy" view

8

The new "Display relationships in class hierarchy" option is great! This is generally fantastic, but sometimes this can be confusing when used with all OPs, e.g. it's a bit unintuitive...

Often I would like to know how an ontology object has been used outside my own ontology. E.g if I am considering obsoleting I want to know what I'd be...

Integrate webprotege with github

10

Almost all of the ontologies I work with have their source maintained in github. It would be great to see some integration between WP and GH. At a minimum, this...

Allow earlier versions of rdflib

2

sparqlwrapper requires rdflib >= 6.1.1 I am using a library that uses rdflib6 but intentionally pins to exclude rdflib 6.1.1 https://github.com/hsolbrig/funowl/blob/main/Pipfile The reason for the pinning is that the rdflib...

propagate NCIT_P334 (ICD-0) property to xref

2

See: https://github.com/monarch-initiative/monarch-app/issues/1567