Colin Diesh

BED file with strand '.' being converted to strand -1

1

Example file ``` NbV1Ch01 18776453 18777002 MACS2_peak_1486 34 . 2.35549 5.48617 3.42439 437 ```

Add ability to load custom types from genbank file

1

Trying to load the genbank record from https://www.ncbi.nlm.nih.gov/nuccore/MT118835.1?report=graph does not work because it does not contain mRNA

I think it is worth probably restarting uploads of the jbrowse-dev.zip release to github releases as it's absense causes confusion to those who arrive straight to the github releases stream

Have a list of default genomes that users can start with

6

If there was a small list of genome such as human, mouse, arabadopsis, etc to kickstart JBrowse/JBrowse desktop with it might lower barrier to entry

The docusaurus docs have ``` table { display:block } ``` This causes messed up rendering  Manually deleting that css fixes it but should probably make jbrowse immune to such...

Leftover feature request by @nathanhaigh from #1235. Color by RG and estimate insert size separately by RG might be helpful for this

I don't have a lot of info on this but the supplementary alignment concept in BAM/CRAM uses a special "SA" tag with extra information about an alignment and also assigns...

Create method to group bigbed features

1

BigBed gene grouping is sort of difficult since there is no gene hierarchy indicating transcript children, so currently BigBed transcripts of the same gene arent loaded into a single gene...