Results 547 comments of Colin Diesh

Added a couple more things about the API just now

My whole electron builder configuration looks as follows for this https://github.com/GMOD/jbrowse-components/blob/223d8bfb68fd1bacaf22852639ad5920f1b7f43b/products/jbrowse-desktop/package.json#L113-L174 importantly for mac I had to set the universal target on both zip and dmg (we release just dmg...

saw something maybe sort of related, with https://github.com/mui/material-ui/blob/master/packages/mui-utils/package.json installing @types/react-is? it is getting v17 when i'm trying to use v18 (i am getting a bunch of errors, and using skipLibCheck...

I got this also. I am wondering if it is related to mitmproxy version. I have mitmproxy 9 I think ``` # mitmproxy --version Mitmproxy: 9.0.1 Python: 3.10.9 OpenSSL: OpenSSL...

more stuff in "linked tables" beyond even the kgXref too...screenshot from their table browser ![Screenshot 2023-09-08 at 17-13-18 Select Fields from hg38 knownGene](https://github.com/GMOD/jbrowse-components/assets/6511937/d2f147da-fb14-484f-ae15-dcd628746c34) key value: uses "select fields from primary...

might try to create a new ucsc-to-json script following discussions from yesterday. the alternative is using their rest api but i think it will be slower and less reliable than...

we now have a ucsc browser at http://s3.amazonaws.com/jbrowse.org/code/jb2/main/index.html?config=%2Fjbrowse.org%2Fdemos%2Fucsc%2Fconfig.json it uses https://github.com/cmdcolin/ucsc2jbrowse to bulk load files it can be improved on (including potentially things like the kgXref mentioned above to access...

potential further enhancements: add @jbrowse/react-app integration, allow synteny and other types of in-app visualizations

sort of related thread: https://github.com/GMOD/jbrowse-jupyter/issues/74

I think we likely will not do this proposal, it is interesting but there are different needs. converging on a similar api might not be bad though