cm760

Hi @PhilPalmer, thank you very much for your reply! I have tried rerunning the pipeline using the command you specified, but it returned the same error message. I then tried...

I tried uncompressing it and running the pipeline with the following command (we used a different bed file but for our purposes it does not matter): `nextflow run nf-core/deepvariant --fasta...

The `prince.config` is the one listed [here](https://github.com/nf-core/configs/blob/master/conf/prince.config), for our institution. The file specifies that singularity is enabled, what executor to use, and where to publish the singularity images. Also sorry,...